Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0501
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   5.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 603 RILLKRNIFLCTQL*IKIVLFY 538
           ++LLK N+FL   +   I+ FY
Sbjct: 113 KLLLKHNLFLLDNIVKPIIAFY 134


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 102 SDRASFAPSFLTCHEGDNDLDRYK 173
           S   S +P FLT  + D D+D ++
Sbjct: 76  SSTKSGSPGFLTYTKADRDVDLFR 99


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 200  FSINKLIKKNICNF 241
            FS+NKL K  IC +
Sbjct: 1079 FSVNKLFKCMICTY 1092


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 200  FSINKLIKKNICNF 241
            FS+NKL K  IC +
Sbjct: 1079 FSVNKLFKCMICTY 1092


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 237 LHIFFLINLLIENYKFKSALLTYS 166
           +++FF + +L+ NY F   +L  S
Sbjct: 102 VNVFFWVIILMSNYAFTRIILLKS 125


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 84  IKFKLHCTNPIYYNLHF*RILYITAK 7
           + F LHC N  +  L+   +LY  +K
Sbjct: 150 LNFMLHCNNTTWRCLYRWIVLYTLSK 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,025
Number of Sequences: 336
Number of extensions: 2841
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)