Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0501
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   3.4  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   3.4  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.9  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 141 GTLGMKARTKRDRTFFFVLIKFKLHCTNPIYYNLH 37
           GTL + ART      F VLI+    C+ P Y N++
Sbjct: 175 GTLPVWARTFGYMNLFGVLIQMAFPCSPPWYENMY 209


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 168 SDRDRYRLRGTLGMKARTKRDRTFFFVL 85
           + RD+ R++  LG+KA T++D   F +L
Sbjct: 220 ASRDKIRMQAKLGIKASTQKDDNDFELL 247


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 124 GANEARSDFFFCFNKI*TTL----HKSDILQSTFLTDFIHYS 11
           G+N + S F+   +++   L    + + I + T LT+F+H+S
Sbjct: 249 GSNSSASSFYLPLDRVVRALRCIENNTPITRGTLLTEFLHWS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,246
Number of Sequences: 5004
Number of extensions: 44056
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)