Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0501
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0059 - 439518-439646,439767-439885,440003-440241,440320-44...    29   4.6  

>07_01_0059 -
           439518-439646,439767-439885,440003-440241,440320-440376,
           440480-440566,440664-441208,441967-442026,443552-443935,
           444049-444114
          Length = 561

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 56  GFVQCSLNFIKTKKKVRSRFVRAFIPNV 139
           GF+QC+L F++T+  V    V A +P V
Sbjct: 250 GFIQCTLRFLQTQSVVTPLVVFALLPLV 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,588
Number of Sequences: 37544
Number of extensions: 197865
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)