Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0501
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical pr...    29   2.4  

>Z92812-7|CAB07281.2|  341|Caenorhabditis elegans Hypothetical
           protein T03E6.8 protein.
          Length = 341

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 282 SFVMCLTLKFFSRI*TLC*IINLKASFTFHSL*ESCIKIRLLIKEKTIISSIYDL*V*LL 461
           S + CL + + SR       + L+ +FTF  + ++C+ + L+I    I+S+++   + +L
Sbjct: 225 SVLTCLKIVYDSRKIVSRETLTLQRNFTFILMYQACVCVALIIVPLAIVSTLFYADISIL 284

Query: 462 KNML 473
            N L
Sbjct: 285 DNGL 288


>U53344-6|AAK77632.2|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.1a protein.
          Length = 702

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 590 KGIYFYVLNYKLK*FCFINSKFWDKSVGSYYVW 492
           KGI F  +NY+L    F+N +  DK  G++ +W
Sbjct: 159 KGIAFVSINYRLGPLGFMNYQNGDKLEGNFGIW 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,799
Number of Sequences: 27780
Number of extensions: 235462
Number of successful extensions: 308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)