Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0499
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    25   0.47 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   0.47 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   2.5  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.7  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 619 FVSIFNFRFIVIGIRWYTINVS 684
           F  I+   +I++ I WYT+N S
Sbjct: 252 FQDIYMIVYIIVVIFWYTVNAS 273


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 619 FVSIFNFRFIVIGIRWYTINVS 684
           F  I+   +I++ I WYT+N S
Sbjct: 252 FQDIYMIVYIIVVIFWYTVNAS 273


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 462 LRFNLYIIITNSQQRY 415
           L   LYII+TN+Q +Y
Sbjct: 232 LYVTLYIILTNNQAKY 247


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 197 KT*VKNIKHHNRIYSQYVLFYKI*NY-*VIGDNY 295
           K  VK  K HN +YS ++L +    +  ++GD+Y
Sbjct: 238 KNLVKVAKDHNSLYSLHLLLWITVTFILLVGDSY 271


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 498 LIYYCTRT*RVDM-NTRVVTSGYILYVNTILIHL*YF*FSIICVNIQF*IYCNRYKMVHH 674
           +++ C  T  + +  T   TS +  ++N+ L+ + Y    I  +NI    + +RYK ++ 
Sbjct: 146 VMFLCYSTYGIQVFGTMQRTSFFKTFLNSCLMDVYYEFLLISLINILIRSFKSRYKDLNQ 205

Query: 675 K 677
           K
Sbjct: 206 K 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,987
Number of Sequences: 336
Number of extensions: 3208
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)