Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0499
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical ...    30   1.5  
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    28   5.9  
U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain (pr...    28   7.9  

>AF047662-3|AAC04443.2|  263|Caenorhabditis elegans Hypothetical
           protein T22B2.5 protein.
          Length = 263

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 494 VINILLY*DVXXXXXXXXCNIRLHFIRE-YYTHSFIILLIFNYLCQ 628
           ++NIL+Y  V        C I L   RE Y+   F I ++F +LCQ
Sbjct: 101 LLNILIYSVVTSIGGLGVCEINLRSKREKYFRVIFWIFIVFIHLCQ 146


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -1

Query: 451 FVYNNY*LTT---ALFRKVSCLIDIGHNINQFILLHLHVFVKIFNFNSMLFCVLSVVVSY 281
           ++Y N   TT    L R V+  ID+ H ++ +I   + V   I NF    +C+   + +Y
Sbjct: 16  YIYENCTNTTNQCGLIRNVASSIDVFHWLDVYISTTIFVISGILNF----YCLFIALYTY 71

Query: 280 YLIILNLVEQYV 245
           Y +     + YV
Sbjct: 72  YFLDNETRKHYV 83


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
 Frame = -1

Query: 505 YINNILKIPLINAIIKV*FVYNNY*LTTALFRKVSCLIDI---GHNINQFILLHLHVFVK 335
           ++ NI+K  L++    + F                C + I    +N + FI         
Sbjct: 285 FLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLCRVGIFRTSYNYSCFIDFLRSQLPS 344

Query: 334 IFNFNSMLFCVLSVVVSYYLIILNLVEQYV 245
           IF+F S+ FC++ + +  Y    N VE  +
Sbjct: 345 IFDFLSIFFCIIRIFLEVYHTNKNYVESVI 374


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 551 NIRLHFIREYYTHSFIILLIFNYLCQYSILDL 646
           N+R  F+  YY  S +I LI  +LC  ++L L
Sbjct: 27  NVRHPFLAAYYLASGVIFLITYFLCFLALLKL 58


>U80439-4|AAB37641.2|  274|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 4 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 78  DHYNILKSVQLNQKQKQLGKWLS 146
           DH   LK  ++ QKQK+  KW S
Sbjct: 248 DHIRSLKEKRMEQKQKERNKWRS 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,933
Number of Sequences: 27780
Number of extensions: 251053
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)