Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0499
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g40087.1 68414.m04742 hypothetical protein                          31   1.0  
At1g34020.1 68414.m04218 transporter-related low similarity to U...    29   2.4  
At4g02600.1 68417.m00354 seven transmembrane MLO family protein ...    29   3.2  
At4g02200.2 68417.m00295 drought-responsive family protein simil...    27   9.6  
At4g02200.1 68417.m00294 drought-responsive family protein simil...    27   9.6  

>At1g40087.1 68414.m04742 hypothetical protein
          Length = 359

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 54  LWIKQH--IIDHYNILKSVQLNQKQKQLGKWLSWLELCVFMYPINY 185
           +WI Q+  +I H++   +  +      LG WLS L   + + PINY
Sbjct: 57  VWIMQNHRVIVHFDEYTNQPIGDSGGLLGSWLSQLSNDIMLLPINY 102


>At1g34020.1 68414.m04218 transporter-related low similarity to
           UDP-sugar transporter [Drosophila melanogaster]
           GI:14971008, UDP-glucuronic acid transporter [Homo
           sapiens] GI:11463949
          Length = 335

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 439 NY*LTTALFRKVSCLIDIGHNINQFILL 356
           +Y L + LF  +SC I IG N++QFI +
Sbjct: 220 DYNLVSVLFITLSCTIAIGTNLSQFICI 247


>At4g02600.1 68417.m00354 seven transmembrane MLO family protein /
           MLO-like protein 1 (MLO1) identical to MLO-like protein
           1 (MLO protein homolog 1) [Arabidopsis thaliana]
           SWISS-PROT:O49621; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 526

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 361 LLHLHVFVKIFNFNSMLFCVLSVV 290
           L HLH+F+ +   + + FCVL+V+
Sbjct: 156 LHHLHIFIFVLAISHVTFCVLTVI 179


>At4g02200.2 68417.m00295 drought-responsive family protein similar
           to drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 207

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 30  NGVCMCCHLWIKQHIIDH 83
           NG+C  C   +K H++DH
Sbjct: 71  NGICPVCSRRVKMHMVDH 88


>At4g02200.1 68417.m00294 drought-responsive family protein similar
           to drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 214

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 30  NGVCMCCHLWIKQHIIDH 83
           NG+C  C   +K H++DH
Sbjct: 71  NGICPVCSRRVKMHMVDH 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,357,175
Number of Sequences: 28952
Number of extensions: 205368
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)