Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.17 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.29 
UniRef50_Q41H04 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A2DHW7 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q0CD65 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -1

Query: 376 PLNFSSDLLSGSRFRCGGRFCVTLLFLGLVLA 281
           P+ F +     SRFR  GRFC  LL LGLVLA
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLA 105


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.29
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -1

Query: 388 HRHSPLNFSSDLLSGSRFRCGGRFCVTLLFLGLV 287
           HR  PL+FS DLLSGSRFR G  +   +L LG +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY--EMLGLGTI 423


>UniRef50_Q41H04 Cluster: Putative uncharacterized protein; n=1;
           Exiguobacterium sibiricum 255-15|Rep: Putative
           uncharacterized protein - Exiguobacterium sibiricum
           255-15
          Length = 265

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = -2

Query: 675 SVIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAKLVHGLKLNRMTAFIPDNDTFVFTIIV 496
           +V   + T+ +S H++    +I+ S +  +T  +L+H L LNR+T     N   ++T+ V
Sbjct: 7   NVYMAKGTRLKSNHSMAAKHLIYTSQFSSHTPVELIHQLLLNRLTLEQEQNPHLMYTLEV 66


>UniRef50_A2DHW7 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 391

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = -2

Query: 675 SVIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAKLVHGLKLNRMTAFIPDNDTFVFTIIV 496
           S+IF+   +S  ++   I  I+ +S +++      +   + +   A I    TF+FT ++
Sbjct: 182 SLIFYAFQQSVGVYVCTICTILLSSFFVYLILGTSLFSGRRHNAVATIAGFATFIFTNLL 241

Query: 495 LILYNSKTVFWKAY 454
             L  SKTV+W  +
Sbjct: 242 QYLVPSKTVYWLTF 255


>UniRef50_Q0CD65 Cluster: Putative uncharacterized protein; n=1;
           Aspergillus terreus NIH2624|Rep: Putative
           uncharacterized protein - Aspergillus terreus (strain
           NIH 2624)
          Length = 347

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 663 FRHTKSRSL-HTLNINFIIWNSVYLHYTHAKLVHGLKLNRMTAFIPDNDTFVFTI 502
           FRH + R L H L I F+IWN+V +      L H L  N      P    F+ +I
Sbjct: 6   FRHRRRRGLFHALLILFVIWNAVEVVLIQRHLWHPLAHNNHQLQSPPERIFIASI 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,524,874
Number of Sequences: 1657284
Number of extensions: 11698474
Number of successful extensions: 26182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26176
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)