Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.2  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 610  MEFSLSALYSCEACS-RTKIKSDDSIHSRQ*YIRVYNHSTHTL 485
            +EFS++ L+ C  C+ +   K ++ +   Q  +R  N    +L
Sbjct: 1077 LEFSVNKLFKCMICTYKADNKENEQLRKIQESLRDLNRKIESL 1119


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 610  MEFSLSALYSCEACS-RTKIKSDDSIHSRQ*YIRVYNHSTHTL 485
            +EFS++ L+ C  C+ +   K ++ +   Q  +R  N    +L
Sbjct: 1077 LEFSVNKLFKCMICTYKADNKENEQLRKIQESLRDLNRKIESL 1119


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -2

Query: 591 HYTHAKLVHGLKLNRMTAFIPDNDTFVFTIIVLILYN 481
           H+ H        LNR T     N  F F I+V+   N
Sbjct: 483 HFPHFTAARFFDLNRKTILGVLNALFTFLIVVVQFEN 519


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/32 (18%), Positives = 18/32 (56%)
 Frame = -3

Query: 269 LEPCELTYSFSEYSMSSMTPRCHYNRWVGQKK 174
           +EP     +++ + +  +    HYNR++ +++
Sbjct: 231 MEPKRQRTAYTRHQILELEKEFHYNRYLTRRR 262


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/32 (18%), Positives = 18/32 (56%)
 Frame = -3

Query: 269 LEPCELTYSFSEYSMSSMTPRCHYNRWVGQKK 174
           +EP     +++ + +  +    HYNR++ +++
Sbjct: 231 MEPKRQRTAYTRHQILELEKEFHYNRYLTRRR 262


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/32 (18%), Positives = 18/32 (56%)
 Frame = -3

Query: 269 LEPCELTYSFSEYSMSSMTPRCHYNRWVGQKK 174
           +EP     +++ + +  +    HYNR++ +++
Sbjct: 231 MEPKRQRTAYTRHQILELEKEFHYNRYLTRRR 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,525
Number of Sequences: 336
Number of extensions: 3185
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)