Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   5.7  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   10.0 

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 110 KSLHARYVIIISDSYNY 60
           K  HA   I++SDSYNY
Sbjct: 13  KPKHALQAIVLSDSYNY 29


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 541 SIHSRQ*YIRVYNHSTHTL*LENRIL 464
           SI S    IR   H+TH + L+NR+L
Sbjct: 582 SIQSTPHSIRTIPHATHAMVLDNRLL 607


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 601 SLSALYSCEACSRTKIKSD 545
           S  A++SC AC R K+K D
Sbjct: 16  SRRAIHSCLACRRKKLKCD 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,472
Number of Sequences: 5004
Number of extensions: 52208
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)