Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0535 + 4234282-4235082                                           29   3.4  
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892...    29   3.4  

>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 654 TKSRSLHTLNINFIIWNSVYLHYTHAKLVHGLKLNRM 544
           T S S  TL +  +      LHY H  LVH L+L R+
Sbjct: 74  TTSLSTPTLRVTILPAALYMLHYVHRTLVHPLRLLRL 110


>06_01_1088 -
           8926361-8927301,8927437-8927705,8927850-8929023,
           8929132-8929399
          Length = 883

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 120 DTNKLNCV-FAWTFHVPETFFLSYPPIVVTSRGHTTHTIFTERVGELTGL*LMDV--ANT 290
           D NKL+ + F   F+V  T+F     I+  S    T     E +GEL  L  +D+  +  
Sbjct: 513 DLNKLHSLRFGINFNVEITWFNQLSNILYLSLKGCTVVKLPESIGELNSLRYLDISYSGC 572

Query: 291 SPRKSRVTQ 317
           SP+ S +++
Sbjct: 573 SPKLSEISR 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,606
Number of Sequences: 37544
Number of extensions: 309804
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)