Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42032| Best HMM Match : Aminotran_5 (HMM E-Value=0.0007)            29   3.4  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    29   3.4  
SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)                     29   4.5  

>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 672 VIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAK 574
           V+ + H+K R+LH LN          LHYTHAK
Sbjct: 417 VLHYTHSK-RALHVLNFTHTKRALHVLHYTHAK 448



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 672 VIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAK 574
           V+ + HTK R+LH L+          LHYTHAK
Sbjct: 76  VLLYTHTK-RALHVLHYTHTKRALNVLHYTHAK 107



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 672 VIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAK 574
           V+ + HTK R+LH L+          LHYTH K
Sbjct: 116 VLHYTHTK-RALHVLHYTHTKRTLHVLHYTHTK 147



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 672 VIFFRHTKSRSLHTLNINFIIWNSVYLHYTHAK 574
           V+ + HTK R+LH L+          LHYTH K
Sbjct: 273 VLHYTHTK-RALHVLHYTHTKRTLHVLHYTHTK 304


>SB_22779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 412 SNQVGGLTHRHSPLNFSSDLLSGSRFRCGG-RFCVTLLF 299
           +N+V       SP + +S  +  SRF CGG  F V +LF
Sbjct: 13  ANEVASTDQTRSPTSGNSSEIMASRFVCGGPNFTVAVLF 51


>SB_42032| Best HMM Match : Aminotran_5 (HMM E-Value=0.0007)
          Length = 306

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 126 NKLNCVFAWTFHVPETFFLSYPPIVVTSR 212
           N+  C F W     E FFL Y PIV ++R
Sbjct: 263 NEKICGFKWAEIFEEPFFLKYEPIVKSTR 291


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 108 FTPVDTNKLNCVFAWTFHVPETF 176
           F+P D    N VF W F +PE F
Sbjct: 593 FSPADMRLNNSVFQWHFRMPEVF 615


>SB_17269| Best HMM Match : RRM_1 (HMM E-Value=8.2)
          Length = 157

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 138 CVFAWTFHVPETFFLSYPPIVVTSRGHTTHT 230
           C+  ++  +P TF  + PPI+ +S  HTT T
Sbjct: 83  CLSTFSPPLPPTFSPTIPPIITSSNFHTTAT 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,398,685
Number of Sequences: 59808
Number of extensions: 382227
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)