Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-5|CAA90357.2|  332|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z50044-5|CAA90357.2|  332|Caenorhabditis elegans Hypothetical
           protein F22B5.5 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 309 VTQNLPPHRKRDPLRRSDEKFSGLCLWVRP 398
           + Q+LP    +D L R  +KF     W+RP
Sbjct: 263 IIQDLPMKDLKDVLVRCSDKFEDSATWIRP 292


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 534 IPDNDTFV---FTIIVLILYNSKTVFWK 460
           +PD+  F    F +  ++LYN  +VFWK
Sbjct: 4   MPDSPKFALVTFVVYAVVLYNVNSVFWK 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,577
Number of Sequences: 27780
Number of extensions: 289058
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)