Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.5  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 619 FYYMEFSLSALYSCE-ACSR 563
           FYYM   + A Y+CE  C+R
Sbjct: 234 FYYMHQQIMARYNCERLCNR 253


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 132 LNCVFAWTFHVPETF-FLSYPPIVVTSRGH 218
           + C+F W + +P  F  L Y  ++ + R H
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 132 LNCVFAWTFHVPETF-FLSYPPIVVTSRGH 218
           + C+F W + +P  F  L Y  ++ + R H
Sbjct: 221 VTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 504 IIVLILYNSKTVFWKAYQDASTI*TPLINIK 412
           ++ L+L +S   F    +DA  + TPL  IK
Sbjct: 3   LLFLVLLSSLVTFGWTLEDAPRVKTPLGAIK 33


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 504 IIVLILYNSKTVFWKAYQDASTI*TPLINIK 412
           ++ L+L +S   F    +DA  + TPL  IK
Sbjct: 3   LLFLVLLSSLVTFGWTLEDAPRVKTPLGAIK 33


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -2

Query: 618 FIIWNSVYLHYTHAKLVHGLKLNRM-----TAFIPDNDTFV 511
           FI + +++  Y H      L LN++     TA IP  + F+
Sbjct: 128 FISYGTLFFIYVHPSATFSLDLNKVVSVFYTAVIPMLNPFI 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,278
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)