Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0498
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    33   0.17 
At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 fam...    31   0.93 
At4g11950.1 68417.m01901 hypothetical protein                          29   2.8  
At1g03510.1 68414.m00332 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    29   3.8  
At3g56810.1 68416.m06318 expressed protein                             29   3.8  
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    28   5.0  
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    28   6.6  
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    28   6.6  
At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin...    27   8.7  

>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 624 INFIIWNSVYLHYTHAKLVHGLKLNRMTAFIPDNDTFVFTIIVLILYNSKTVFWKAYQ 451
           ++ +I   +++H  +     G KL   T F P    F F ++ +I+Y S   FWK Y+
Sbjct: 358 VSLVIALGLFIHARNIMGAVGHKLYMETMF-PLYSLFAFVVLHMIMYASNIYFWKRYR 414


>At1g26730.1 68414.m03255 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 750

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 624 INFIIWNSVYLHYTHAKLVHGLKLNRMTAFIPDNDTFVFTIIVLILYNSKTVFWKAYQ 451
           ++ ++   +++H  +     G K+   T F P    F F ++ +I+Y S   FWK Y+
Sbjct: 361 VSLVVALVMFIHARNIMGAVGHKVYMETMF-PLYSLFAFVVLHMIMYASNIYFWKRYR 417


>At4g11950.1 68417.m01901 hypothetical protein
          Length = 327

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 436 LNSFNKH*SNQVGGLTHRHSPLNFSSDLLSGSRFRCG 326
           + +FN H   + G +   H P NFSS  ++ ++FRCG
Sbjct: 38  IRNFNIH--FKTGAIQKVHLPSNFSSIDIATAKFRCG 72


>At1g03510.1 68414.m00332 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 429

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 621 NFIIWNSVYLHYTH-AKLVHGLKLNRMTAFIPDNDTF 514
           N ++WN++  HYTH  K+   ++L      +P+  +F
Sbjct: 113 NAVVWNAMISHYTHCGKVKEAVELYEAMDVMPNESSF 149


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 354 RSDEKFSGLCLWVRPPTWLL*CLLKEFKSSKHLGKPSRIRF 476
           RS  +  G+C  V P  W   C LKE K  ++   P+RI+F
Sbjct: 77  RSKAESYGICRIVPPVAWRPPCPLKEKKIWENSKFPTRIQF 117


>At3g56810.1 68416.m06318 expressed protein 
          Length = 332

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 358 PTRNSVGCVCGLGHLPGCFNVY*RSLNRR-SILVSLPEYGFRVIKY 492
           P RNS       G LPG FN++  + NRR SI +   +   R + Y
Sbjct: 23  PRRNSNSSAVSSGCLPGFFNLFLSTFNRRKSITLGSKKREQRTVVY 68


>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 466 LEGLPRCFDDLNSFNKH*SNQVGGLTHRHSPLNFSSD 356
           L+G+P   +D+  F ++  N +    H H+ ++ S D
Sbjct: 348 LDGVPEEVEDIEPFKRNDDNTITHFAHEHNLMSLSKD 384


>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -1

Query: 466 LEGLPRCFDDLNSFNKH*SNQVGGLTHRHSPLN 368
           L+G+P   +D+  F ++  N +   +HRH+ ++
Sbjct: 350 LDGVPEEIEDIEPFKRNDDNTIDHFSHRHNHMS 382


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 375 GLCLWVRPPTWLL*CLLKE 431
           G+C  V PP+W   CLLKE
Sbjct: 136 GICCVVPPPSWKPPCLLKE 154


>At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin
            family protein contains Pfam profile: PF03177
            non-repetitive/WGA-negative nucleoporin
          Length = 1464

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 481  LENRILE-GLPRCFDDLNSFNKH*SNQVGGLTHRHSPLNFSSDLLSGSR 338
            LEN +LE G P     L +   H  +QVG ++   SPL  S   +S  +
Sbjct: 1036 LENELLEYGGPDLVPFLQNAGSHSESQVGAVSTGSSPLGHSGTQISSDQ 1084


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,097
Number of Sequences: 28952
Number of extensions: 263973
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)