Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.2  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   2.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.8  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 207 LVVFVRTQQPPPLTEQLF 260
           L+ FV+  +P PL E+LF
Sbjct: 228 LLFFVKVFRPEPLCERLF 245


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 82  FVKHSQDRAPPDY 44
           ++KH Q  A PDY
Sbjct: 332 YLKHEQQGAAPDY 344


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 283  SNETLFQQNNCSVNGGGCCVRTNTTSVPG 197
            +N T    +N SVN     + TN  + PG
Sbjct: 1006 NNRTHSATSNSSVNANTNNIPTNAGTTPG 1034



 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 312 SLGVSNSTWNQTKHYSNRI 256
           SL    S   QT+HY+N I
Sbjct: 490 SLAEMTSHMQQTQHYTNII 508


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,142
Number of Sequences: 336
Number of extensions: 1463
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)