Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   2.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   3.4  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   4.4  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    24   5.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    24   7.8  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    24   7.8  

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 285 NQTKHYSNRIIVPLTAAVVVFARIQQVYREARRPQRG---PQGCRE*D 151
           N+     +  + P T A+   AR+    REAR  +RG   PQ  RE D
Sbjct: 276 NRDTSLKSHFVEPRTQALRPGARLTYKLREARSSKRGESTPQSFREED 323


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 85  HFVKHSQDRAPPDYATRKSREEFN 14
           HF K+S ++   +YA  K ++EFN
Sbjct: 445 HFEKNSMEQFCINYANEKLQQEFN 468


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 66  WECFTKCQ*ITIRYPHCTATCSARSCPLNLTPCILEVRVEADE 194
           WE   +   + + YP CT          NL   +++V VE DE
Sbjct: 100 WEQNDEILMLNVAYPTCTYAADFAKNQHNLRLDVIDVGVEIDE 142


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 154 SLPASLRSALRPTSLPVHLL--YSCEH 228
           S+   LRS   P SLP+HL   YS  H
Sbjct: 152 SISLHLRSESAPISLPIHLYKSYSYNH 178


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 150 NLTPCILEVRVEADEPPG-TLVVFVRTQQPPPLTEQLF 260
           N TP I   R E   P G  L+VF R++    L EQLF
Sbjct: 142 NGTPRIKIYRTEDGTPKGDALIVFFRSESVE-LAEQLF 178


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 342 SFNNIKCVLSSLGVSNSTWNQTKHYSNRIIVPLTAAVVVFA 220
           SF+   C+  +  +S        HY+ R  +    A+ +FA
Sbjct: 541 SFSCYNCISGTRNISRQYSRDKFHYNQRTTIYYLVAISIFA 581


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 31  SFWWRSPGALGPGSALQ 81
           S+WW S   LGP   +Q
Sbjct: 177 SYWWNSEEYLGPAVLMQ 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,141
Number of Sequences: 5004
Number of extensions: 24365
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)