Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    28   1.8  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    27   3.1  
01_06_0038 - 25819433-25820344                                         27   4.0  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    26   7.1  
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    26   9.3  
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570...    26   9.3  

>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 104 SNSYSLAFCKALPGPSAPGLRHQKEPRR 21
           S++ S++ C A P PSA G +  + PRR
Sbjct: 22  SSAASISCCAAPPPPSAKGSQESRTPRR 49


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 345  LSFNNIKCVL-----SSLGVSNSTWNQTKHYSNRIIVPLTAAVVVFARI-QQVYREARR 187
            +  NNIK +      SS+G   S W   KH  + +++        F  I QQ+ RE R+
Sbjct: 1646 MKHNNIKALSKVLADSSIGTQKSLWEDLKHLKSPLLIVAGEKDPKFKEISQQMCREIRK 1704


>01_06_0038 - 25819433-25820344
          Length = 303

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 241 GGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSGQL--RALQVAVQCGYRI 98
           GGG C      + P  SS+S+ +S   G +   +   RA      CGY +
Sbjct: 172 GGGACAFPTAAAAPSSSSSSSSSSSAGGRKLVEETVWRAYCNGRSCGYAV 221


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 94  IHWHFVKHSQDRAPPD 47
           +HW F++ S++R+P D
Sbjct: 264 LHWRFIRPSEERSPRD 279


>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 109 GYRIVIHWHFVKHSQDRAPPDYATR 35
           GYR +++W   K S+  A   YA R
Sbjct: 127 GYRYLVYWRLDKTSKIEAATSYAAR 151


>06_02_0085 +
           11555539-11555632,11555767-11555867,11556947-11557056,
           11557152-11557227,11557412-11557555,11558432-11558503,
           11558601-11559470
          Length = 488

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 222 ARIQQVYREARRPQRGPQGCRE*DLADS 139
           A I++  +E RRP+ GP G  + +  DS
Sbjct: 140 AEIRKALKEGRRPEAGPPGGDKDEAPDS 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,528,123
Number of Sequences: 37544
Number of extensions: 189516
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)