Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.2  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      27   3.2  
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    27   3.2  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   27   5.5  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 26   7.3  
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   26   9.7  
SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       26   9.7  
SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 26   9.7  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               26   9.7  

>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGG-SSASTRTSRMQ 161
           V+++++  Q   C V  G C V+T+ + +    S   TR S++Q
Sbjct: 206 VQTSKSKIQTRKCKVQTGKCKVQTSKSKIHASKSKIQTRKSKIQ 249


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGG-SSASTRTSRMQ 161
           V+++++  Q   C V  G C V+T+ + +    S   TR S++Q
Sbjct: 206 VQTSKSKIQTRKCKVQTGKCKVQTSKSKIHASKSKIQTRKSKIQ 249


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 155 EI*RTASSATSRGAMWISNSYSLAFCKALPGP 60
           EI R  ++ATS+ + +   SYS  +C  L GP
Sbjct: 297 EISRNKAAATSKPSFYEFLSYSYCYCGLLTGP 328


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 285 NQTKHYSNRIIVPLTAAVVVFARIQQVYR 199
           N ++HYSN + VPLT   +V     Q  R
Sbjct: 125 NLSRHYSNLVRVPLTEPAIVHNNRPQFMR 153


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 229  CVRTNTTSVPGGSSASTRTSRMQGVR 152
            C RT+TTS P  ++A TR  R+Q  R
Sbjct: 1511 CPRTSTTSAP-AATAPTRQGRVQNNR 1535


>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 727

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 108 PHCTATCSARSCPLNLTPCI-LEVRVEADEPP 200
           P C A CSAR    + TP + LE + +A  PP
Sbjct: 265 PVCRAACSARGRGGSTTPPVDLESQEDAQVPP 296


>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 328 KMRIIKFGSF*LHVESNETLFQQNNCSVNGGGCC-VRTNTTSVPGGSSASTRTSR 167
           K+ +  FGS  + V+   +++ Q  C V+GG CC     T  VP GS+    + R
Sbjct: 257 KVSMYLFGS--MGVQHPVSVYYQ--CRVHGGSCCGPLYRTLHVPDGSNDDVISGR 307


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 123  TCSARSCPLNLTPCILEVRVEADEPPGTLVVFVRTQQPPPLTE 251
            TC+A +    +      + +EA EP G+   F+   QP  +TE
Sbjct: 3325 TCTATN-ECGMAKRTYNIDIEASEPKGSTPQFIDLMQPVEVTE 3366


>SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTS 170
           VE+ ET F  +       G CV   TTS    S AS + S
Sbjct: 230 VENTETPFYWDRVETLDEGFCVSKETTSPRNSSDASPQDS 269


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 285 NQTKHYSNRIIVPLTAAVVVFARIQQVYR 199
           N  +HYSN + VPLT   +V     Q  R
Sbjct: 129 NLPRHYSNLVRVPLTEPAIVHNNRPQFMR 157


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 188 GLNADLKDAGSEI*RTASSATSRGAMWISNSYSLAFCKALPGPSAPGLRHQKE 30
           G  + + + GS I    SS  S   M  ++   +A    LP  S PG+RH ++
Sbjct: 738 GSPSSISNTGSPITMHTSSTLSPCKMSSTSGLRIAGGPQLPPVSHPGIRHYQD 790


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 285  NQTKHYSNRIIVPLTAAVVVFARIQQVYR 199
            N  +HYSN + VPLT   +V     Q  R
Sbjct: 4447 NLPRHYSNLVRVPLTEPAIVHNNRPQFMR 4475


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 285 NQTKHYSNRIIVPLTAAVVVFARIQQVYR 199
           N  +HYSN + VPLT   +V     Q  R
Sbjct: 244 NLPRHYSNLVRVPLTEPAIVHNNRPQFMR 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,633,941
Number of Sequences: 59808
Number of extensions: 202917
Number of successful extensions: 647
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)