Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    27   3.7  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   4.9  
AF016417-1|AAK68335.1|  241|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical pr...    26   6.4  
DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor ...    26   6.4  
AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    26   6.4  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AL110484-2|CAB54393.1|  267|Caenorhabditis elegans Hypothetical ...    26   8.5  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    26   8.5  
AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical ...    26   8.5  
AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical...    26   8.5  
AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical ...    26   8.5  
AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -1

Query: 218 EYNKCTGRLVGLNADLKDAGSEI*RTASSATSRGAMWISNSYSLAFCK 75
           +YN    R +G++  L D  S +   ASS+TS  A   +N  SLAFC+
Sbjct: 49  QYNGKKLRAIGMSEPLSDKVSAV---ASSSTSVFAAHGTNITSLAFCR 93


>Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical
           protein F30A10.6 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -2

Query: 319 IIKFGSF*LHVESNETL-FQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSG 143
           I  FG F L   S ET  FQ+     N   C  RTN         + T   RM G+ +S 
Sbjct: 373 ISSFGYFYLSPNSMETSRFQRGFFRTNCMDCLDRTNVVQSMLARESLTEQLRMLGILYSE 432

Query: 142 Q 140
           Q
Sbjct: 433 Q 433


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 306 GVSNSTWNQTKHYSNRIIV 250
           G +   WN+TKH+ N+++V
Sbjct: 230 GPTPQLWNETKHFQNKMLV 248


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 268 FQQNNCSVNGGGCCVRTNTTSVPGGSSAS 182
           F   NC    G C   T   SVPGG S +
Sbjct: 317 FVNQNCQRTCGRCGSSTGNPSVPGGGSCT 345


>AF016417-1|AAK68335.1|  241|Caenorhabditis elegans Hypothetical
           protein F17A9.3 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = -2

Query: 286 ESNETLFQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSGQLRALQVAVQCG 107
           ES E LF+QNN +      C  +  +S    S  ST  S    V    +L+  +  V   
Sbjct: 59  ESTERLFEQNNNNSEKAESC-SSRDSSHDSSSPTSTGGSSRDNVIVRNELKRKKDQV--- 114

Query: 106 YRIVIHWHFVKHSQDRAPPDYATRKSREE 20
            + V +W   + + D A      R+ +E+
Sbjct: 115 -KDVAYWERRRKNNDAAKRSRDQRRMKED 142


>Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical
           protein F39D8.2b protein.
          Length = 241

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSGQLRALQVAVQC 110
           +E +E  FQ  N ++      ++    SV G  S   + +  Q +  +   R L+   QC
Sbjct: 146 LEMSEAAFQAQNKAMESALATLQ----SVSGSLSLPLQFTH-QSITAAQIERNLEFLKQC 200

Query: 109 GYRIVIHWHFVKHSQDRAPPDYATRKSRE 23
           G+   +  +F+K S +++P      KS++
Sbjct: 201 GFPTQLPPNFLKPSNEKSPEKSEEEKSQK 229


>Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical
           protein F39D8.2a protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSGQLRALQVAVQC 110
           +E +E  FQ  N ++      ++    SV G  S   + +  Q +  +   R L+   QC
Sbjct: 186 LEMSEAAFQAQNKAMESALATLQ----SVSGSLSLPLQFTH-QSITAAQIERNLEFLKQC 240

Query: 109 GYRIVIHWHFVKHSQDRAPPDYATRKSRE 23
           G+   +  +F+K S +++P      KS++
Sbjct: 241 GFPTQLPPNFLKPSNEKSPEKSEEEKSQK 269


>DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor
           PSA-3 splice variantbeta protein.
          Length = 241

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = -2

Query: 289 VESNETLFQQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSRMQGVRFSGQLRALQVAVQC 110
           +E +E  FQ  N ++      ++    SV G  S   + +  Q +  +   R L+   QC
Sbjct: 146 LEMSEAAFQAQNKAMESALATLQ----SVSGSLSLPLQFTH-QSITAAQIERNLEFLKQC 200

Query: 109 GYRIVIHWHFVKHSQDRAPPDYATRKSRE 23
           G+   +  +F+K S +++P      KS++
Sbjct: 201 GFPTQLPPNFLKPSNEKSPEKSEEEKSQK 229


>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 75  FTKCQ*ITIRYPHCTATCSARSCPLNLTPCILEVRVEAD 191
           FT CQ + +       T     CPL+L   + EVRVE +
Sbjct: 155 FTNCQKLEVH-----ETAETEVCPLDLEEIVKEVRVEKE 188


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
            T06E4.1 protein.
          Length = 1295

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 184  STRTSRMQGVRFSGQLRALQVAVQCGYRIVIHWHFVKHSQD 62
            ST TSR Q    + ++  L+ ++    + +     VKH QD
Sbjct: 974  STETSRSQSNELAARIEELEASISFAQKALQDVEDVKHQQD 1014


>U70852-3|AAK29822.1|  836|Caenorhabditis elegans Hypothetical
           protein F45E4.3b protein.
          Length = 836

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 RYPHCTATCSARSCPLNLTPCILEVRVEADE-PPGTLVVFVRTQ 230
           RY H T+  S +S P         +  +ADE PP   ++ +RTQ
Sbjct: 283 RYHHPTSVASHQSHPSTFKHMSKSIACQADELPPVKPMISLRTQ 326


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
           protein F45E4.3a protein.
          Length = 1231

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 RYPHCTATCSARSCPLNLTPCILEVRVEADE-PPGTLVVFVRTQ 230
           RY H T+  S +S P         +  +ADE PP   ++ +RTQ
Sbjct: 283 RYHHPTSVASHQSHPSTFKHMSKSIACQADELPPVKPMISLRTQ 326


>AL110484-2|CAB54393.1|  267|Caenorhabditis elegans Hypothetical
           protein Y38E10A.2 protein.
          Length = 267

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 333 NIKCVLSSLGVSNSTWNQTKHYSNRIIVPL 244
           N +C    +    +++N  KHY N  + P+
Sbjct: 85  NFECTYPMMSTQQASYNTLKHYDNFALKPI 114


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 165 ILEVRVEADEPPGTLVVFVRTQQPP-PLT 248
           I++++   DEP  T++V +RT  PP P+T
Sbjct: 66  IMQIKQNPDEP-ATIIVAIRTLLPPTPVT 93


>AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical
           protein T02B11.8 protein.
          Length = 94

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -2

Query: 265 QQNNCSVNGGGCCVRTNTTSVPGGSSASTRTSR 167
           Q   C   GG CC  TN    PG S  +  T +
Sbjct: 47  QYGCCPFTGGTCCPGTNHCCPPGFSCTTIGTCK 79


>AC024790-10|AAF60632.2|  129|Caenorhabditis elegans Hypothetical
           protein Y47D7A.11 protein.
          Length = 129

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 130 LQVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 32
           L + VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


>AC024790-5|AAF60640.2|  119|Caenorhabditis elegans Hypothetical
           protein Y47D7A.2 protein.
          Length = 119

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 130 LQVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 32
           L + VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


>AC024790-4|AAF60636.1|  121|Caenorhabditis elegans Hypothetical
           protein Y47D7A.7 protein.
          Length = 121

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 130 LQVAVQCGYRIVIHWHFVKHSQDRAPPDYATRK 32
           L + VQCGY +  + +    S    PP Y T K
Sbjct: 11  LVILVQCGYPVAENSYPTTPSYPTPPPSYPTPK 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,904,630
Number of Sequences: 27780
Number of extensions: 150709
Number of successful extensions: 445
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)