Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0497
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro...    27   4.5  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    26   6.0  

>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
           protein 35 family protein / VPS35 family protein similar
           to vacuolar protein sorting 35 [Mus musculus]
           GI:11875394; contains Pfam profile PF03635: Vacuolar
           protein sorting-associated protein 35
          Length = 830

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 ADEPPGTLVVFVRTQQPPPLTEQLFCWNNVSFDS 287
           AD   G  V+F   + P     ++FCWN V + S
Sbjct: 382 ADIGSGIYVLFCYIKLPTTYLIRIFCWNRVHWGS 415


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 117 TATCSARSCPLNLTPCILEVRVEADEPPGTLVVFVRTQQPPPLTEQLFCWNNVSFDST 290
           T+ C   +C  NL   + +   E     G     V  Q PPP+ E   C   V  D+T
Sbjct: 108 TSGCWFSTC--NLGEKVFKKLTEVKSLSGKDFQEVTEQPPPPVVEVRLCQQTVGLDTT 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,213
Number of Sequences: 28952
Number of extensions: 137661
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)