Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0493
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688           28   9.1  
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    28   9.1  

>07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688
          Length = 329

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 367 PVKQTTNIKNRWRA*NRSLCSRMRL 293
           P +    +KNRW A  RSL S+ RL
Sbjct: 176 PGRSENTVKNRWNATKRSLNSKRRL 200


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 165 NTRLCVAIQE*DGGTELLGPS----TQGSSHLT*MLINIYSLSRL 43
           N  LCV + + DGG EL         QGSSH T  L  + S S +
Sbjct: 40  NGLLCVGLHQTDGGDELYATECLKMNQGSSHETNKLDAVMSASTM 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,443
Number of Sequences: 37544
Number of extensions: 352317
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)