Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0493
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35960.1 68418.m04330 protein kinase, putative contains prote...    28   5.7  
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr...    27   10.0 

>At5g35960.1 68418.m04330 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 429

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 120 ELLGPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSY 1
           +LLG   +G  HL   L    SL+ +L   +++M+WS  Y
Sbjct: 193 KLLGYGVEGGMHLVLELSPHGSLASMLYSSKEKMKWSIRY 232


>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 458

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 707 EVEKPKVLYKLVLHVDLTTYRKRKSNSLRC 618
           E E+  V YK    VD + + K  +NSLRC
Sbjct: 329 EEEEDTVNYKPQSEVDQSCFNKNNNNSLRC 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,552
Number of Sequences: 28952
Number of extensions: 291029
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)