Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0492
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   1.8  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   9.9  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 62  KGPNKVGFIGLLQPLSDAIKLFTKERTYPNFSNYFC 169
           K PN VG I    PL+ + K  T      N SN  C
Sbjct: 28  KSPNSVGAIPSSSPLASSTKASTSTPFVENCSNLLC 63


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 663 LINKILEYSAKKIKANPHLLYSILNPETNSL--SPSAKSKGVRFVSA 529
           ++NK    S +   +N H LYS+   ET SL  S  A + G+   S+
Sbjct: 30  VLNKSFRSSRQSSVSNGHGLYSLDRDETESLMSSHEASNAGISLDSS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,514
Number of Sequences: 5004
Number of extensions: 21852
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)