Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0491
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    86   5e-18
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   2.0  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   6.1  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 85.8 bits (203), Expect = 5e-18
 Identities = 40/61 (65%), Positives = 53/61 (86%)
 Frame = +1

Query: 4   AVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 183
           AV+ LV+LAS Q++FV L +V+++TNRRVN+IEH+IIPRLE T+ YI SEL+ELERE+F 
Sbjct: 143 AVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELEELEREDFT 202

Query: 184 R 186
           R
Sbjct: 203 R 203


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 485 NEENHNTTKSIKKFHFIHGHKVARAPFLFYFCYFFD--APLRST 360
           N EN N   +    HF  G+K    PF+ Y   F D   PLR T
Sbjct: 79  NLENLNRNITYNLQHFYEGYKHVDVPFVHYVNEFQDKKLPLRPT 122


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 25  LASLQTSFVTLDEVIKITNRRVNAIEHVII 114
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,385
Number of Sequences: 5004
Number of extensions: 34663
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)