Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0491
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1340 + 32766773-32767582                                         95   5e-20
09_04_0144 + 15071723-15071993,15072078-15072632,15072671-150726...    31   0.90 
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    29   2.7  
01_07_0024 - 40559423-40559863,40559959-40560192,40560546-405608...    29   2.7  
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    28   6.3  
10_02_0144 + 5815403-5815520,5815551-5816314                           28   8.4  

>04_04_1340 + 32766773-32767582
          Length = 269

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 44/61 (72%), Positives = 55/61 (90%)
 Frame = +1

Query: 4   AVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 183
           A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ PRLE T++YI  ELDELERE+F+
Sbjct: 151 AIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFF 210

Query: 184 R 186
           R
Sbjct: 211 R 211


>09_04_0144 +
           15071723-15071993,15072078-15072632,15072671-15072681,
           15072954-15073012,15073962-15074040
          Length = 324

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 398 YFCYFFDAPLRSTNRLCMECY 336
           YFCY+  AP++  +  CM C+
Sbjct: 303 YFCYYCAAPMKKDSHYCMSCH 323


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 412 HRFYFIFVISSTLRCGLQTGYVWSATYGLRTA 317
           +RF+++FV S+TL C    G+ W     +R A
Sbjct: 165 YRFFYMFVFSTTLLCLYVFGFCWVYIVKIRDA 196


>01_07_0024 -
           40559423-40559863,40559959-40560192,40560546-40560842,
           40561048-40561230,40561534-40561590,40561851-40561937
          Length = 432

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 421 LHAHRFYFIFVISSTLRCGLQTGYVW 344
           L  +RF+++FV S+TL C    G+ W
Sbjct: 208 LRNYRFFYMFVFSTTLLCLYVFGFCW 233


>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 421 LHAHRFYFIFVISSTLRCGLQTGYVWSATYGLRTA 317
           L  +RF+++FV S+TL C     + W     +R A
Sbjct: 277 LRNYRFFYMFVFSTTLLCLYVFAFCWVYIIKIRNA 311


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 370 CGLQTGYVWSATY-----GLRTASPHR-PHPASW*PRRASRCRQPGERL 242
           CG QTG+V+S +      G R  +PHR     +  P+R  R R  GE L
Sbjct: 68  CGAQTGHVFSRSIEVVRRGGRVLAPHRLRRSPALGPKRQKRRRGKGESL 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,287
Number of Sequences: 37544
Number of extensions: 219828
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)