Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0491
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   105   4e-23
U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    31   0.61 
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81109-13|CAB03247.2|   91|Caenorhabditis elegans Hypothetical p...    27   9.9  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   9.9  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  105 bits (251), Expect = 4e-23
 Identities = 47/61 (77%), Positives = 57/61 (93%)
 Frame = +1

Query: 4   AVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 183
           A++LLVELA+LQT F+TLDE IK+TNRRVNAIEHVIIPR+E TL YI++ELDE+EREEF+
Sbjct: 143 AIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMEREEFF 202

Query: 184 R 186
           R
Sbjct: 203 R 203


>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 441 VKLLNRFCSIVVFFIFHP*IRLLLYKRCDMFNIYIMYILNY 563
           V L  R C+I+ F I  P   L+LYK    F  Y  Y+L Y
Sbjct: 8   VFLTQRVCTILAFLIHFPLTLLILYKSPSSFGAY-KYLLTY 47


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/20 (40%), Positives = 18/20 (90%)
 Frame = -2

Query: 467 TTKSIKKFHFIHGHKVARAP 408
           ++++  K+HF++GHK+++AP
Sbjct: 27  SSEASDKYHFVNGHKMSKAP 46


>U40061-6|AAA81152.2|  426|Caenorhabditis elegans Hypothetical
           protein ZK563.6 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 272 CAAGSPTCWMRAMRTCCSKSICSTPYIAC 358
           C  G P C ++   +CC++ I S P   C
Sbjct: 341 CPPGQPLCPVQRFTSCCNEFITSDPKSEC 369


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 419 ARAPFLFYFCYFFDAPLRSTNRLCME 342
           A+   L +FC  F  P+RST  L M+
Sbjct: 10  AKTSILLHFCLCFQVPIRSTRELRMK 35


>Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical
           protein C53A5.8 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 408 VFILFLLFLRRSAAVYKQAMYGVLHMDLEQQVLIAL 301
           VF+L LLFL + +  +  + Y +L +DL   +L  L
Sbjct: 33  VFMLILLFLFQFSKKFSYSFYRILQLDLITNILCNL 68


>Z81109-13|CAB03247.2|   91|Caenorhabditis elegans Hypothetical
           protein R10D12.7 protein.
          Length = 91

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 432 RAQSCTRTVFILFLLFLRRSAAVYKQAMY 346
           + + CT+ VFI FLL+L      YK A +
Sbjct: 44  KCRGCTKHVFINFLLYLLLVLPAYKHATW 72


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 272 CAAGSPTCWMRAMRTCCSKSICST 343
           C+ G   C +   R+CCS S CS+
Sbjct: 40  CSCGCSGCDLFPNRSCCSSSCCSS 63


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 408 VFILFLLFLRRSAAVYKQAMYGVLHMDLEQQVLI 307
           V ++  LFL   + VYK A Y ++ MDL   +L+
Sbjct: 34  VMMICFLFLMGFSKVYKNAFYKLVQMDLLINLLV 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,277,478
Number of Sequences: 27780
Number of extensions: 205527
Number of successful extensions: 521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)