Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0491
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.53 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 423 SCTRTVFILFLLFLRRSAAVYKQAMYGVLHMDLEQQVLIALI 298
           SCT ++  L ++ + R  A+ K   YGV        V ++L+
Sbjct: 124 SCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLV 165


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 388 ISSTL-RCGLQTGYVWSATYGLRTAS--PHRPHPASW*PRRAS 269
           +SS L R    +  V+ +T G    S  PH+ HP+ + P R S
Sbjct: 290 LSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGS 332


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 331 GLRTASPHRPHPASW*PRRASR 266
           G+R A+P    P +W P    R
Sbjct: 506 GIRLAAPFNASPTTWSPADLDR 527


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 482 EENHNTTKSIKKFHFIHGHKVARAPFLFYFCYFFDAPLRSTN 357
           +E      S  K H ++GH V + P     C  + A L+  N
Sbjct: 262 DEKPLDVSSNDKVHPLYGHGVCKWPGCEVICEDYQAFLKHLN 303


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 435 SRAQSCTRTVFILFLLFLRRSAAVY 361
           S   + T   F+LF+L ++ + AVY
Sbjct: 77  SHCMTITFASFLLFILLVQIAVAVY 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,458
Number of Sequences: 438
Number of extensions: 2357
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)