Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0491
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...    94   9e-20
At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    29   4.0  
At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein bet...    27   9.2  
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    27   9.2  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 43/61 (70%), Positives = 55/61 (90%)
 Frame = +1

Query: 4   AVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 183
           A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P+LE T++YI  ELDELERE+F+
Sbjct: 143 AIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKLENTISYIKGELDELEREDFF 202

Query: 184 R 186
           R
Sbjct: 203 R 203


>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 421 LHAHRFYFIFVISSTLRCGLQTGYVW 344
           L  +RFYF+FV+ STL C     + W
Sbjct: 197 LRNYRFYFMFVLCSTLLCIYVHVFCW 222


>At3g47050.1 68416.m05109 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           TREMBL:AB017502_1
          Length = 612

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 454 LRSFTSFTGTKLHAHRFYFIFVISSTLRCGLQTGYVWSATYGL-RTASP 311
           + S++S+ G KLH+H F    ++   L  G + GYV S   GL R + P
Sbjct: 255 MASYSSWNGDKLHSHYFLLTEILKQKL--GFK-GYVVSDWEGLDRLSDP 300


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 412 HRFYFIFVISSTLRCGLQTGYVW 344
           +RF+F+FV S+TL C     + W
Sbjct: 191 YRFFFMFVFSTTLLCIYVFAFCW 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,259
Number of Sequences: 28952
Number of extensions: 176724
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)