Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0489
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 93 1e-18
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 93 1e-18
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 93 1e-18
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 93 1e-18
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 93 1e-18
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 93 1e-18
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 93 1e-18
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 47 7e-05
BC117279-1|AAI17280.1| 780|Homo sapiens CCDC128 protein protein. 31 6.1
BC111059-1|AAI11060.1| 574|Homo sapiens CCDC128 protein protein. 31 6.1
AK172762-1|BAD18745.1| 780|Homo sapiens protein ( Homo sapiens ... 31 6.1
AK172753-1|BAD18739.1| 615|Homo sapiens protein ( Homo sapiens ... 31 6.1
AC093635-1|AAX93161.1| 769|Homo sapiens unknown protein. 31 6.1
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 93.1 bits (221), Expect = 1e-18
Identities = 62/168 (36%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = +1
Query: 67 EVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKL-EGDVVKVKNV 243
+ H G CP NF++ Y G WYEI K P E NG+C A Y L E +KV N
Sbjct: 21 QAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFE-NGRCIQANYSLMENGKIKVLNQ 79
Query: 244 HI-IDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKY 420
+ DG IEG A + + AKL V KF +LATDY NYA+ Y+C
Sbjct: 80 ELRADGTVNQIEGEATPV-NLTEPAKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC 136
Query: 421 DDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 564
+ H F WIL+RN L + ++ N + S ID K+ TD
Sbjct: 137 -IIQLFHVDFAWILARNPNLPPETVDSLKNILT--SNNIDVKKMTVTD 181
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 47.2 bits (107), Expect = 7e-05
Identities = 31/84 (36%), Positives = 41/84 (48%)
Frame = +1
Query: 313 AKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDA 492
AKL V KF +LATDY NYA+ Y+C + H F WIL+RN L +
Sbjct: 12 AKLEV--KFSWFMPSAPYWILATDYENYALVYSCTC-IIQLFHVDFAWILARNPNLPPET 68
Query: 493 KTAVDNFIKEHSKEIDSSKLVHTD 564
++ N + S ID K+ TD
Sbjct: 69 VDSLKNILT--SNNIDVKKMTVTD 90
>BC117279-1|AAI17280.1| 780|Homo sapiens CCDC128 protein protein.
Length = 780
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 623 CFPCSVITLELVNLQASSEKSVCTSFEESISLECSL-MKLSTAVLASPSSFLFL 465
CF ++ +L +L+ E S+CTS + +LE S MK TAV +++ L
Sbjct: 351 CFLRKILPYQLKSLEEECESSLCTSALRARNLELSQDMKKMTAVFEKLQTYIAL 404
>BC111059-1|AAI11060.1| 574|Homo sapiens CCDC128 protein protein.
Length = 574
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 623 CFPCSVITLELVNLQASSEKSVCTSFEESISLECSL-MKLSTAVLASPSSFLFL 465
CF ++ +L +L+ E S+CTS + +LE S MK TAV +++ L
Sbjct: 351 CFLRKILPYQLKSLEEECESSLCTSALRARNLELSQDMKKMTAVFEKLQTYIAL 404
>AK172762-1|BAD18745.1| 780|Homo sapiens protein ( Homo sapiens
cDNA FLJ23923 fis, clone COL03279. ).
Length = 780
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 623 CFPCSVITLELVNLQASSEKSVCTSFEESISLECSL-MKLSTAVLASPSSFLFL 465
CF ++ +L +L+ E S+CTS + +LE S MK TAV +++ L
Sbjct: 351 CFLRKILPYQLKSLEEECESSLCTSALRARNLELSQDMKKMTAVFEKLQTYIAL 404
>AK172753-1|BAD18739.1| 615|Homo sapiens protein ( Homo sapiens
cDNA FLJ23914 fis, clone CAS01989. ).
Length = 615
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 623 CFPCSVITLELVNLQASSEKSVCTSFEESISLECSL-MKLSTAVLASPSSFLFL 465
CF ++ +L +L+ E S+CTS + +LE S MK TAV +++ L
Sbjct: 186 CFLRKILPYQLKSLEEECESSLCTSALRARNLELSQDMKKMTAVFEKLQTYIAL 239
>AC093635-1|AAX93161.1| 769|Homo sapiens unknown protein.
Length = 769
Score = 30.7 bits (66), Expect = 6.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 623 CFPCSVITLELVNLQASSEKSVCTSFEESISLECSL-MKLSTAVLASPSSFLFL 465
CF ++ +L +L+ E S+CTS + +LE S MK TAV +++ L
Sbjct: 351 CFLRKILPYQLKSLEEECESSLCTSALRARNLELSQDMKKMTAVFEKLQTYIAL 404
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,440,858
Number of Sequences: 237096
Number of extensions: 1834730
Number of successful extensions: 4310
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4294
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -