Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0488
(460 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 23 1.4
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 23 1.4
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 23 1.8
AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head orthol... 23 1.8
DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein. 22 3.2
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 22 3.2
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 21 5.5
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 21 7.3
AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein. 21 7.3
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 21 7.3
EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate 1-deca... 20 9.6
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 23.0 bits (47), Expect = 1.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 253 NFQGPQRVSGHRRKC 209
NF GP R++ R+C
Sbjct: 601 NFHGPHRLAARSRRC 615
Score = 21.0 bits (42), Expect = 5.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 125 PDLSAASSGHFGLPRRTLVFKDEG 54
P +S++ G VFKDEG
Sbjct: 2 PHVSSSGGDDLGSTDEVKVFKDEG 25
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 23.0 bits (47), Expect = 1.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 253 NFQGPQRVSGHRRKC 209
NF GP R++ R+C
Sbjct: 493 NFHGPHRLAARSRRC 507
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 22.6 bits (46), Expect = 1.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 171 RIPWNSNAQAEKKTLPGPLG 112
+IPW+ NA+A K G G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349
>AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head
orthologue protein.
Length = 431
Score = 22.6 bits (46), Expect = 1.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 450 HRPHPLPVQTRHAPVLRANPYS 385
+R HPL + + H +L NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353
>DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein.
Length = 314
Score = 21.8 bits (44), Expect = 3.2
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Frame = -3
Query: 266 HPSPEFSRSAESIRTPPQMRCSSRSE-----PYLPSIGFH 162
HP S+ + + PPQ+ + R E P +P + F+
Sbjct: 217 HPDSPNSKKSATPSPPPQLEVNERKENLTCQPAVPYVPFY 256
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 21.8 bits (44), Expect = 3.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Frame = -3
Query: 299 YGYEPARHLHVHPSPEFSRSAESIR 225
+ Y P H +P+P + A+ R
Sbjct: 76 WNYSPDNHFEQYPNPTYYNLADPAR 100
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 21.0 bits (42), Expect = 5.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +1
Query: 241 DLENSGEGCTWRCRAGSYPYPQQVS 315
D N G+G + +C YP +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 20.6 bits (41), Expect = 7.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 428 SKPDTPRSSEP 396
SKP TP S EP
Sbjct: 227 SKPGTPPSGEP 237
>AF321227-6|AAK16426.1| 150|Tribolium castaneum Pb protein.
Length = 150
Score = 20.6 bits (41), Expect = 7.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 11 FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 121
F+ P+ F + P L + G + S TPP G
Sbjct: 60 FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 20.6 bits (41), Expect = 7.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +2
Query: 11 FLFRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRG 121
F+ P+ F + P L + G + S TPP G
Sbjct: 60 FINSQPSMAEFMTALPHLSGDMTHGASISPQNTPPAG 96
>EU019709-1|ABU25221.1| 540|Tribolium castaneum aspartate
1-decarboxylase protein.
Length = 540
Score = 20.2 bits (40), Expect = 9.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 295 GTNRRDISTYIPHLNFQGPQRVS 227
G R D T+ PH PQ+ S
Sbjct: 339 GIERADSVTWNPHKLLTAPQQCS 361
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,534
Number of Sequences: 336
Number of extensions: 2650
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -