Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0488
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   1.4  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.2  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.2  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   5.6  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.6  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   5.6  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.3  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   7.3  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    25   7.3  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    25   7.3  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    24   9.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   9.7  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   9.7  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 304 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 176
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 212 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 359 FPYLHYSID*RLFTLETCCGYGYEPARHL 273
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 71  RVFDGVTQSGLKTPPRGPGRV 133
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 7   PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 165
           PV +   G  TV+   P+S+  +    +P+ P  A+       + CL +   W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 71  RVFDGVTQSGLKTPPRGPGRV 133
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 7   PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 123
           P+PI P+    ++    P+S  TS R   P  P+D    S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 241 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 98
           P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 160 PWNPIEGRYGSEREEHRI 213
           P+ P+EG Y + ++ HRI
Sbjct: 3   PYEPVEGLYVNAKQYHRI 20


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 176 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 75
           ++   GTR L+ K    PD+  ++ G + L   T
Sbjct: 8   NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 131 LFPDLSAASSGHFGLPRRT 75
           LFP +S  + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 217  RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 62
            +K   + +P HI LL +  E + + +++ +   SRRR    L    EH  LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 429 VQTRHAPVLRANPYSEVTDPI 367
           +++ H  +L  +PY +V DPI
Sbjct: 287 LKSYHLSILEVDPYFQVNDPI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,661
Number of Sequences: 5004
Number of extensions: 43598
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)