Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0488
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.25
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.45
06_01_0350 + 2534422-2535615 31 0.59
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 0.78
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.0
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.4
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 2.4
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 3.1
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 4.2
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 4.2
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 7.3
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 27 7.3
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 7.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 9.6
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 27 9.6
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 27 9.6
02_02_0590 - 11894721-11895188,11895684-11895851 27 9.6
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 450 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 271
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 31.1 bits (67), Expect = 0.45
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 263 PSPEFSRSA-ESIRTPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 105
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 104 SGHFGLPRRTLVFKDEGTI 48
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 165 PWNSNAQAEKKTLPGPLGGVFRP 97
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 30.3 bits (65), Expect = 0.78
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 453 RHRPHPLPVQTRHAPVLRANP 391
+++ H +PVQ H+PVL+ NP
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNP 356
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 22 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 186
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 441 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 352
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 435 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 322
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 447 RPHPLPVQTRHAPVLRANPYSEVTDP 370
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 349 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 224
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 175 EGRYGSEREEHRICGGVRILSADLENSGEGCT-WRC-RAGSYPYPQQVSKVKSL*SIE*C 348
+GR+G++R HR+ G +A SG+ C WR R +P P S++ +
Sbjct: 6 DGRFGNKRVHHRL--GPANGAASSSTSGKVCIHWRAGRCNRFPCPYLHSELPEATAKRPS 63
Query: 349 R*GKSANWIRNFGIRIGSEDRGVSGLDG 432
+ G N RN G RG G G
Sbjct: 64 QSGGGGNVWRN-PHSGGGGGRGAGGAGG 90
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 302 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 171
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 7.3
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 GNPVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEG 180
G V + PGSG V +IVP V G W R + F F + +E
Sbjct: 13 GCGVRVIVPGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEE 68
Query: 181 RYGS-EREEH 207
+GS E EEH
Sbjct: 69 EHGSGEEEEH 78
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 426 QTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 295
+ RH P++ + EV+ + L L Y ++ L + +LL +W
Sbjct: 100 ELRHIPIIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELLNLW 143
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 263 PSPEFSRSAESIRTPPQMRCSSRSEPYLPSI 171
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 165 PWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*N-GSAAGFRNRNR 7
P + A+ +++T P G + W+TPSN R R G + G + G R+R+R
Sbjct: 1578 PRYTPAKTKQETEPMGTGFDRQETWLTPSNGRGGRGGRGRGSRGGSRGGRSRSR 1631
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 447 RPHPLPVQTRHAPVLRANPY 388
RPH P+ T H P+ A P+
Sbjct: 398 RPHRFPLLTEHPPIWTAQPH 417
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 429 VQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 319
++T A L+++P S+ R+PLP R+EAL+
Sbjct: 110 LETIIARNLKSSPLSQQVTRALRIPLPRTLKRIEALN 146
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 49 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 147
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,670
Number of Sequences: 37544
Number of extensions: 345969
Number of successful extensions: 1238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -