Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0487
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    53   5e-06
UniRef50_Q6NQ74 Cluster: At5g26910; n=6; Arabidopsis thaliana|Re...    33   4.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 53.2 bits (122), Expect = 5e-06
 Identities = 23/28 (82%), Positives = 24/28 (85%)
 Frame = -2

Query: 448 RLALFIYLLLRWVDELTAHLVLSGYWSP 365
           R  L  +LLLRWVDELTAHLVLSGYWSP
Sbjct: 148 RFCLSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q6NQ74 Cluster: At5g26910; n=6; Arabidopsis thaliana|Rep:
           At5g26910 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 853

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = -1

Query: 353 NVNAPSTLRYKF*GLSIVTTATPPFKPKRITASR---TYPCGLTRGPITSKQAVD--KSV 189
           ++  PST   KF G S         KP  ++A     T P  +TR     K+  D  K V
Sbjct: 278 SLTTPSTS--KFMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTRNSANQKEKADAKKCV 335

Query: 188 ITS*TSHRSAKCSLEARQSSYVGNKKQKCRSRRPNL 81
           + S  + R A  S+  +      N+KQ CR  +P++
Sbjct: 336 VKSQNALRGAPISM-GKNMFKQNNQKQNCRDNQPSM 370


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,308,463
Number of Sequences: 1657284
Number of extensions: 12212779
Number of successful extensions: 21224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21223
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)