Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0487
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.4  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   7.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -1

Query: 413 GGRAHSPPGVKWLLEPIDIYN---VNAP-STLRYKF*GLSIVTTATPPFKPKRITASRT 249
           GG  H P  V WLL P DIY+   VN    T      G+S+V        P  +T  RT
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYSGRKVNVQIETQSELTMGMSVVDWWQVGLLPANVTFLRT 292


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 86  SVFCSGISVSYCLRKSSDALLASIWPIYVRSKTLSQTCLQP 208
           S+ C    ++ CLRK    L   I P  + SK  S+T + P
Sbjct: 218 SILCLVTQIAQCLRKGEILLAREILP-KIHSKLESETFVWP 257


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 404 AHSPPGVKWLLEPIDIYNVNAPSTLR 327
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,282
Number of Sequences: 5004
Number of extensions: 53758
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)