Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0487
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-647|AAF45961.3|  981|Drosophila melanogaster CG12184-PA...    30   2.4  
AL031227-2|CAA20226.1|  958|Drosophila melanogaster EG:66A1.3 pr...    30   3.2  

>AE014298-647|AAF45961.3|  981|Drosophila melanogaster CG12184-PA
           protein.
          Length = 981

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
 Frame = -1

Query: 398 SPPGVKWLLEPIDIYNVNAPSTLRYKF*GLSIVTTATPPFKPKRITASRTYPCGLTRGPI 219
           SPP  K  +            T   ++  + IV  ++P F+   +T + +   G  R PI
Sbjct: 108 SPPPSKHNISQFTSPKSEVTQTKPNEYTIIPIVLASSPSFRSVAVTQTMSQSAGDIRRPI 167

Query: 218 TSKQAVDKSVITS*TSHRSAKCSLEAR-QSSYVGNKKQKCRS 96
            S Q  +K   T  + H+S K + + + +S    +K   C++
Sbjct: 168 KSPQMQNKKTQTLESVHKSHKHTKKCQCKSRRQDSKVSSCQT 209


>AL031227-2|CAA20226.1|  958|Drosophila melanogaster EG:66A1.3
           protein.
          Length = 958

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -1

Query: 311 LSIVTTATPPFKPKRITASRTYPCGLTRGPITSKQAVDKSVITS*TSHRSAKCSLEAR-Q 135
           + IV  ++P F+   +T + +   G  R PI S Q  +K   T  + H+S K + + + +
Sbjct: 137 IPIVLASSPSFRSVAVTQTMSQSAGDIRRPIKSPQMQNKKTQTLESVHKSHKHTKKCQCK 196

Query: 134 SSYVGNKKQKCRS 96
           S    +K   C++
Sbjct: 197 SRRQDSKVSSCQT 209


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,144,307
Number of Sequences: 53049
Number of extensions: 561243
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)