Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0487
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26910.1 68418.m03209 expressed protein                             33   0.13 

>At5g26910.1 68418.m03209 expressed protein
          Length = 900

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = -1

Query: 353 NVNAPSTLRYKF*GLSIVTTATPPFKPKRITASR---TYPCGLTRGPITSKQAVD--KSV 189
           ++  PST   KF G S         KP  ++A     T P  +TR     K+  D  K V
Sbjct: 325 SLTTPSTS--KFMGKSSTDGLKGKVKPSYVSAQAKAGTTPLSVTRNSANQKEKADAKKCV 382

Query: 188 ITS*TSHRSAKCSLEARQSSYVGNKKQKCRSRRPNL 81
           + S  + R A  S+  +      N+KQ CR  +P++
Sbjct: 383 VKSQNALRGAPISM-GKNMFKQNNQKQNCRDNQPSM 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,879
Number of Sequences: 28952
Number of extensions: 268994
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)