Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9CTV0 Cluster: Adult male thymus cDNA, RIKEN full-leng...    34   2.0  
UniRef50_Q65M86 Cluster: Putative uncharacterized protein; n=2; ...    32   7.9  

>UniRef50_Q9CTV0 Cluster: Adult male thymus cDNA, RIKEN full-length
           enriched library, clone:5830476G13 product:hypothetical
           protein, full insert sequence; n=1; Mus musculus|Rep:
           Adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830476G13 product:hypothetical protein,
           full insert sequence - Mus musculus (Mouse)
          Length = 126

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 24/54 (44%), Positives = 27/54 (50%)
 Frame = -3

Query: 268 PG*VDLFELPSPWLPEVPSVVLLASVCGLDRLRPSPWTPSWVLSGVFFLPPSRP 107
           PG +  F L SP  P  PS+   ASV   DR    P  P  V S V  LPP+RP
Sbjct: 76  PGLLSAFSLWSPE-PPCPSLSFYASVLNRDR---QPLPPFLVASFVCLLPPARP 125


>UniRef50_Q65M86 Cluster: Putative uncharacterized protein; n=2;
           Bacillus|Rep: Putative uncharacterized protein -
           Bacillus licheniformis (strain DSM 13 / ATCC 14580)
          Length = 532

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -3

Query: 256 DLFELPSPWLPEVPSVVLLASVCGLDRLRPSPWTPSWVLSGVFF 125
           +L    SPW+P V S  +LA    +D   P P T S VLSGV F
Sbjct: 489 ELLHEESPWVPLVHSTPILAGSKDIDGYVPHP-TGSEVLSGVEF 531


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,488,017
Number of Sequences: 1657284
Number of extensions: 6859033
Number of successful extensions: 18432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18420
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)