Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    24   1.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   1.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.2  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 328 LNFNCNILYLV--WLFNTICILLCLQKLDFFKQ 420
           L  + NI+ LV  W+F    ++LC Q L  F Q
Sbjct: 193 LKLSINIISLVQLWIFQLYLLILCDQILREFDQ 225


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 325 YLNFNCNILYLVWLFNTICILLC 393
           +L  N +++ L++LFN   I++C
Sbjct: 235 FLISNISLVSLIFLFNCTLIIMC 257


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 299 YHFFPDFFIPP 267
           YH +P+F +PP
Sbjct: 176 YHPYPNFGVPP 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,431
Number of Sequences: 336
Number of extensions: 2011
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)