Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0660 + 30687366-30687370,30687823-30688765,30688820-306889...    30   1.4  
03_04_0024 + 16556026-16556588,16556757-16556868                       29   2.5  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    29   2.5  
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    29   3.3  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    28   4.4  

>02_05_0660 +
           30687366-30687370,30687823-30688765,30688820-30688971,
           30689301-30689316,30690410-30690508,30690598-30690671,
           30690827-30691076
          Length = 512

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 187 GLDRLRPSPWTPSWVLSGVFFLPPSRPDMV 98
           G  RL PSP  P    +G +F  PSRP+ V
Sbjct: 10  GCPRLPPSPPLPQAPPAGYYFTSPSRPEAV 39


>03_04_0024 + 16556026-16556588,16556757-16556868
          Length = 224

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 283 ISLFHPG*VDLFELPSPWLPEVPSVVLLASVCGLDRL-RPSPWTPSWV 143
           + + H G V    LP P  P  PSV  + S      +  P PW PSW+
Sbjct: 47  VEVHHGGLVAPSPLPDP-PPPSPSVAAIFSFSSSSLIFPPPPWRPSWL 93


>03_01_0479 +
           3671792-3671844,3671950-3675691,3675815-3675895,
           3675973-3676042,3676157-3676224
          Length = 1337

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 524 ILLYFNKLKNIVIYVFTNADDIFERYHIKVC*QDSCLKKSSFCKHNNIHIVLNSQTRYKI 345
           +L    KL + VI  +  A ++ +   I  C QD CL  S  C    +H+++  +    +
Sbjct: 220 VLADAGKLFSQVIQAYAEAGNLGKSISIYDCAQDRCLIPSGSCYQVLLHLLMERRKNDLV 279

Query: 344 LQLKL 330
           L++ L
Sbjct: 280 LRVYL 284


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 271 HPG*VDLFELPSPWLPEVPSVVLLASVCGLDRLRPS 164
           H G  DL EL   W P++PS+++  +  G + L PS
Sbjct: 417 HQGQKDLKELH--WHPQIPSMIISTAADGFNMLMPS 450


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 220 VPSVVLLASVCGLDRLRPSPWTPSWVLSGVF 128
           +PSV     VCG+ R+ PSP  P  VL G F
Sbjct: 200 MPSVAASPVVCGMKRIDPSPSDP--VLKGRF 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,522,797
Number of Sequences: 37544
Number of extensions: 176989
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)