Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25975| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   3.4  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                27   7.9  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_25975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 527 TILLYFNKLKNIVIYVFTNADDIFERYHIKVC*QDSCLKKSSFCKHNNIHIV 372
           TI+ +  K + +  + F    DI+ R  +     + C  K++F KH NI  +
Sbjct: 29  TIVSFIGKAETVFSFWFETRRDIYSRRRLPEGNVELCTGKAAFVKHYNISAI 80


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 93   RTTMSGREGGKKKTPESTQEGVQGDGRRRSSPQTEA 200
            R   SG E GK+KTP  T++G     +R    +T A
Sbjct: 1101 RPKASGSEKGKRKTPNRTEKGDSHMSQRVGQAETAA 1136


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 414 QARILLTYFNMISFEYVICICKNVYYN 494
           Q  +LL+  N  S++ VIC C N++ N
Sbjct: 103 QKSLLLSLSNPDSYQVVICSCTNIHRN 129


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 372 YNMYIVVFAETRFFQARILLTYFNMIS 452
           YN+YI++  E+ + Q ++L+ Y+ ++S
Sbjct: 666 YNIYIIILYESIYSQYQLLICYYIILS 692


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,652,612
Number of Sequences: 59808
Number of extensions: 217800
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)