Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    23   5.1  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    23   5.1  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    23   5.1  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.0  

>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 214 SVVLLASVCGLDRLRPSPWTPSWVLSG 134
           +V L A V  LD ++PSP    W L G
Sbjct: 56  AVQLGAKVAVLDFVKPSPRGTKWGLGG 82


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 214 SVVLLASVCGLDRLRPSPWTPSWVLSG 134
           +V L A V  LD ++PSP    W L G
Sbjct: 32  AVQLGAKVAVLDFVKPSPRGTKWGLGG 58


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 214 SVVLLASVCGLDRLRPSPWTPSWVLSG 134
           +V L A V  LD ++PSP    W L G
Sbjct: 29  AVQLGAKVAVLDFVKPSPRGTKWGLGG 55


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 117 GGKKKTPESTQEGVQGDGRRRSS 185
           G     P++   G  GDG++RSS
Sbjct: 384 GLNNNEPDTAGGGTVGDGKKRSS 406


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,106
Number of Sequences: 2352
Number of extensions: 7001
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52142868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)