Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2746|AAO41351.1| 1674|Drosophila melanogaster CG15086-P...    29   3.2  
AY075291-1|AAL68158.2| 1193|Drosophila melanogaster AT30755p pro...    28   7.4  
AE013599-2745|AAO41350.1| 1497|Drosophila melanogaster CG15086-P...    28   9.8  
AE013599-2744|AAO41349.1| 2087|Drosophila melanogaster CG15086-P...    28   9.8  
AE013599-2743|AAF57655.1| 1908|Drosophila melanogaster CG15086-P...    28   9.8  

>AE013599-2746|AAO41351.1| 1674|Drosophila melanogaster CG15086-PD,
            isoform D protein.
          Length = 1674

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 108  GREGGKKKTPESTQEGVQ--GDGRRRSSPQTEAKRXXXXXXXXXXXXNSK-RSTYPGWNK 278
            G E G+K  P+S QE  +  G+ R + +P+++AK             N++ + T  G  K
Sbjct: 1609 GAESGEKTAPQSKQESSEHVGNLRTKDTPRSKAKETPKETPQSKTKENAQVKETQLGNEK 1668

Query: 279  EIR 287
             IR
Sbjct: 1669 SIR 1671


>AY075291-1|AAL68158.2| 1193|Drosophila melanogaster AT30755p
           protein.
          Length = 1193

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 512 FNKLKNIVIYVFTNADDIFERYHIKVC*QDSCLK 411
           F +LK +  +   N  D+ E YH KV  +DSCL+
Sbjct: 278 FKQLKVMDDWTEVNDYDVEETYHEKVASRDSCLE 311


>AE013599-2745|AAO41350.1| 1497|Drosophila melanogaster CG15086-PC,
            isoform C protein.
          Length = 1497

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 108  GREGGKKKTPESTQEGVQ--GDGRRRSSPQTEAK 203
            G E G+K  P+S QE  +  G+ R + +P+++AK
Sbjct: 1198 GAESGEKTAPQSKQESSEHVGNLRTKDTPRSKAK 1231


>AE013599-2744|AAO41349.1| 2087|Drosophila melanogaster CG15086-PB,
            isoform B protein.
          Length = 2087

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 108  GREGGKKKTPESTQEGVQ--GDGRRRSSPQTEAK 203
            G E G+K  P+S QE  +  G+ R + +P+++AK
Sbjct: 1788 GAESGEKTAPQSKQESSEHVGNLRTKDTPRSKAK 1821


>AE013599-2743|AAF57655.1| 1908|Drosophila melanogaster CG15086-PA,
            isoform A protein.
          Length = 1908

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 108  GREGGKKKTPESTQEGVQ--GDGRRRSSPQTEAK 203
            G E G+K  P+S QE  +  G+ R + +P+++AK
Sbjct: 1609 GAESGEKTAPQSKQESSEHVGNLRTKDTPRSKAK 1642


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,897,974
Number of Sequences: 53049
Number of extensions: 304861
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)