Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0484
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69662-2|CAA93498.1| 440|Caenorhabditis elegans Hypothetical pr... 30 0.98
Z74027-2|CAA98420.1| 210|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF324058-1|AAK01419.1| 210|Caenorhabditis elegans Ly-6-related ... 30 1.3
AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine re... 28 4.0
U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical ... 27 6.9
U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol ... 27 9.1
U49946-4|AAC48135.1| 952|Caenorhabditis elegans Diacylglycerol ... 27 9.1
U49946-3|AAX55698.1| 796|Caenorhabditis elegans Diacylglycerol ... 27 9.1
U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol ... 27 9.1
U49946-1|AAX55697.1| 794|Caenorhabditis elegans Diacylglycerol ... 27 9.1
>Z69662-2|CAA93498.1| 440|Caenorhabditis elegans Hypothetical
protein F56D5.2 protein.
Length = 440
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 105 SGREGGKKKTPESTQEGVQGDGRRRSSPQTEAK 203
+GR GG+K + E +Q ++ DG + SS ++++K
Sbjct: 382 NGRNGGEKGSMERSQRSLKSDGTQPSSDKSKSK 414
>Z74027-2|CAA98420.1| 210|Caenorhabditis elegans Hypothetical
protein C13G3.2 protein.
Length = 210
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 420 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 515
R L Y N +S +YV+C C Y N + ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157
>AF324058-1|AAK01419.1| 210|Caenorhabditis elegans Ly-6-related
protein HOT-6 protein.
Length = 210
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 420 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 515
R L Y N +S +YV+C C Y N + ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157
>AF068709-6|AAC19249.1| 319|Caenorhabditis elegans Serpentine
receptor, class t protein27 protein.
Length = 319
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 345 YFISSLAV*YNMYIVVFAETRFFQARILLTYFNMISF 455
Y + +L V Y MY V+F F ++ L +FN + F
Sbjct: 153 YGVLTLPVIYGMYFVIFTTPIAFSSKHLTWFFNPLIF 189
>U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical
protein F18A1.7 protein.
Length = 266
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 422 SCLKKSSFCKHNNIHIVLNSQTRY 351
+CLKK +C HN + +S Y
Sbjct: 92 TCLKKEQYCDHNKLFAKASSSVEY 115
>AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical
protein H10E21.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 160 WTPSWVLSGVFF-LPPSRPDMVV 95
WTP W L +FF PPS MV+
Sbjct: 220 WTPYWALFWLFFTFPPSNNWMVI 242
>U49946-5|AAX55699.1| 919|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform e protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 365 CLIQYVYCCVCR 400
CLI+ YCCVCR
Sbjct: 90 CLIKRKYCCVCR 101
>U49946-4|AAC48135.1| 952|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform b protein.
Length = 952
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 365 CLIQYVYCCVCR 400
CLI+ YCCVCR
Sbjct: 90 CLIKRKYCCVCR 101
>U49946-3|AAX55698.1| 796|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform d protein.
Length = 796
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 365 CLIQYVYCCVCR 400
CLI+ YCCVCR
Sbjct: 90 CLIKRKYCCVCR 101
>U49946-2|AAC48134.1| 950|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform a protein.
Length = 950
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 365 CLIQYVYCCVCR 400
CLI+ YCCVCR
Sbjct: 90 CLIKRKYCCVCR 101
>U49946-1|AAX55697.1| 794|Caenorhabditis elegans Diacylglycerol
kinase protein 1,isoform c protein.
Length = 794
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 365 CLIQYVYCCVCR 400
CLI+ YCCVCR
Sbjct: 90 CLIKRKYCCVCR 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,487
Number of Sequences: 27780
Number of extensions: 173130
Number of successful extensions: 399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -