Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 518 LYFNKLKNIVIYVFTNADDIFER 450
           +Y   ++   + ++ NADD F+R
Sbjct: 200 VYIADVEGYALIIYNNADDSFQR 222


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 521 LLYFNKLKNIVIYVFTNADDIFER 450
           L+Y    K   + V+ NADD F R
Sbjct: 200 LVYMADHKGDALIVYQNADDSFHR 223


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 429 LTYFNMISFEYVICICKN-VYYNIFQFVK 512
           + Y ++ SF Y+ CI    +YYNIF+ ++
Sbjct: 344 IIYSSLSSF-YIPCIIMVFLYYNIFKALR 371


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 474 CKNVYYNIFQFVKI 515
           CK +YYNI    +I
Sbjct: 351 CKKLYYNIINIEQI 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,600
Number of Sequences: 438
Number of extensions: 2718
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)