Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0484
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M...    27   6.4  
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    27   8.5  
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH...    27   8.5  

>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; related to
           glutathione-regulated potassium-efflux system protein
           [Escherichia coli] GP|606284|gb|AAA58147
          Length = 568

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 395 KHNNIHIVLNSQTRYKILQLKLR 327
           K NN+ ++ N +++Y ILQ+ LR
Sbjct: 131 KKNNVFVMSNKKSKYPILQVDLR 153


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 114 EGGKKKTPES-TQEGVQGDGRRRSSPQTEAK 203
           E GKK+T  + T+E  +GD +    P+ EAK
Sbjct: 165 EDGKKETEAAKTEEKKEGDKKEEEKPKEEAK 195


>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
           (CHX16) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 847

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 223 EVPSVVLLASVCGLDRLRPSPWTPSWV-LSGVFFL 122
           +V + VLLA    L   R SP  P WV LSG+ F+
Sbjct: 248 DVAAWVLLALAVSLSGDRNSPLVPLWVLLSGIAFV 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,942,898
Number of Sequences: 28952
Number of extensions: 152379
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)