Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0483
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    24   1.4  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   5.6  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   5.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.8  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.8  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 245 NLRAILKKKSGKMQRLGILSIAQGL 319
           N RA +KK SG    L +  +AQGL
Sbjct: 278 NKRAKIKKASGTKNPLALQLMAQGL 302


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 685 TFSETMRLPKMMDRFFCSHFPVITLSIRYFHAQTFYFTMK 566
           T ++  R P  +  +F   F V+  S+  F    FY T++
Sbjct: 15  TPTKEKRFPHRIHSYFMVAFYVVFSSVSTFFKIPFYSTLR 54


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 685 TFSETMRLPKMMDRFFCSHFPVITLSIRYFHAQTFYFTMK 566
           T ++  R P  +  +F   F V+  S+  F    FY T++
Sbjct: 15  TPTKEKRFPHRIHSYFMVAFYVVFSSVSTFFKIPFYSTLR 54


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 294 PSRCILPDFF 265
           P++C+LPD F
Sbjct: 157 PTQCVLPDCF 166


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 294 PSRCILPDFF 265
           P++C+LPD F
Sbjct: 164 PTQCVLPDCF 173


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 27  GFYGPLAAIQEHRSDEGVRRRE*KERPP 110
           G   P +A+Q  R+D+  RR     +PP
Sbjct: 115 GDTSPNSALQRARADKTYRRSYTHAKPP 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,995
Number of Sequences: 336
Number of extensions: 2586
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)