Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0483
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    53   2e-07
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    53   2e-07
Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    37   0.012
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    37   0.012
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    30   1.9  
U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    29   4.3  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    28   7.5  

>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = +1

Query: 7   IENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 171
           +++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC ++
Sbjct: 10  VDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = +1

Query: 7   IENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 171
           +++++ Q +++R P++ S A +R + E  E  DPL++  DKK NPWAEK KC ++
Sbjct: 10  VDSLRSQLNIERTPITVSAAELRRFTESQE--DPLVNPIDKKVNPWAEKSKCSML 62


>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 10  ENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 171
           E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C ++
Sbjct: 9   EQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSVL 62


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +1

Query: 10  ENMKYQASMDRWPLSRSIAAMREYVEENEKNDPLIHAPDKKNNPWAEKGKCIIM 171
           E +  +A++ R  +S     + ++ E+N+ ND L+  P  ++NP+ EK  C ++
Sbjct: 9   EQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQHNPFQEKKSCSVL 62


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 679 SETMRLPKMMDRFFCSHFPVITLSIRYFHAQTF 581
           SE + +  +    F   +PV++LS+RYF+A+T+
Sbjct: 299 SEFLYIVTISQAVFIVVYPVLSLSMRYFYAETY 331


>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 174 LHNNAFSFLGPRVVLFVRSVYQGVVLFILFDVLPHR 67
           L+ N FS    ++V+F+  ++   VL I F + P R
Sbjct: 110 LYKNVFSSKWTKLVIFISFIFSTTVLTIFFQIYPCR 145


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   EQIENMKYQASMDRWPLSRSIAAMREYVEENEK 99
           + + NM+ +A    W    S+ AM+EY E + K
Sbjct: 406 DDLNNMRTEAEFATWKSRGSLKAMKEYFEGHRK 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,216
Number of Sequences: 27780
Number of extensions: 244049
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)