Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0481
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.98 
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.9  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 16  QSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 108
           QS    P + P    T  + PSPSP+  SYP
Sbjct: 307 QSSASHPVLQPPAPSTLQFNPSPSPAAPSYP 337


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 7   QSSQSQPHLPAVHPADQRTRLWQPSP--SPSVLSYPNSTISYTSL 135
           QSSQ   HL    P++++  L  PSP   PS  S  N    Y  L
Sbjct: 142 QSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYL 186


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  ADQRTRLWQPSPSPSVLSYPNSTISYTS 132
           A Q +RL  P P PS  S P  TIS  S
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,038
Number of Sequences: 5004
Number of extensions: 63195
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)