Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0480
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    44   0.002
UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    41   0.029
UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2 transc...    33   4.4  
UniRef50_Q5BWW8 Cluster: SJCHGC04818 protein; n=1; Schistosoma j...    33   5.9  
UniRef50_A5PEK1 Cluster: Putative uncharacterized protein; n=2; ...    33   7.7  
UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 141 EGHARAAEAVVQHNTEAVRQAAEASREIHET 233
           + HARA EA VQ+NT+A RQ AEA+R  HE+
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEANRAAHES 46


>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 357 APYGIAAPYGIAAPYTAYGA-YGVAPYG 437
           APYG  APYG  APY  YGA YG  PYG
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPYG 108



 Score = 37.9 bits (84), Expect = 0.21
 Identities = 20/29 (68%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 357 APYGIAAPYGIAAPYTAYGA-YGV-APYG 437
           APYG  APYG  APY  YGA YG  APYG
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPYG 103



 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/29 (65%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 363 YGIAAPYGIAAPYTAYGA-YGV-APYGLG 443
           YG  APYG  APY  YGA YG  APYG G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_UPI00005A47B7 Cluster: PREDICTED: similar to NK2
           transcription factor related, locus 6; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to NK2 transcription
           factor related, locus 6 - Canis familiaris
          Length = 342

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 378 PYGI-AAPYTAYGAYGVAPYGLG 443
           PYG  AAPY+ YG Y  AP+G G
Sbjct: 274 PYGAPAAPYSCYGGYAGAPFGAG 296


>UniRef50_Q5BWW8 Cluster: SJCHGC04818 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04818 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 290

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 408 YGAYGVAPYGLGVHAW*TDHDREPLFSNISYAKIACFFF 524
           + + G  PYG   H W   HD    F N+S+ K  C FF
Sbjct: 55  FASDGWCPYGYNCHFW---HDPSVKFPNVSFVKKPCQFF 90


>UniRef50_A5PEK1 Cluster: Putative uncharacterized protein; n=2;
           Erythrobacter|Rep: Putative uncharacterized protein -
           Erythrobacter sp. SD-21
          Length = 230

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 473 AVVIGLPS-VDAEAVGGDAVSAISGVGRGDSVRCGDA-IGGSDQG 345
           AV++G P+   AEA+GG  V  I GV R  SV  GDA +G S+ G
Sbjct: 75  AVLVGCPNEASAEALGGTIVDTIDGV-RLVSVPMGDANVGMSENG 118


>UniRef50_A3A1H2 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 392

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 479 RLAVVIGLPSVDAEAVGGDAV-SAISGVGRGDSVRCGDA 366
           RL V +G   VD  AVGGD +   + GV R +++  GDA
Sbjct: 138 RLNVAVGGGGVDGAAVGGDGIDGVVVGVDRLEALEVGDA 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,824,571
Number of Sequences: 1657284
Number of extensions: 5435721
Number of successful extensions: 18571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18497
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)